What Happens in the Brain When You Have Multiple Sclerosis?

Multiple sclerosis isn’t just about occasional numbness or fatigue. At its core, it’s a slow, invisible war inside your central nervous system. Your immune system, which normally protects you from viruses and bacteria, starts attacking the protective coating around your nerve fibers - the myelin sheath. This isn’t a one-time event. It keeps happening, over and over. Each attack leaves behind scars - lesions - where the myelin is stripped away. That’s when symptoms like blurred vision, weak legs, or tingling hands show up.

Here’s the catch: when the inflammation calms down, your body can sometimes repair the myelin. That’s why many people with MS have flare-ups followed by periods of feeling fine. But if the attacks keep coming, the nerve fibers underneath - the axons - start getting damaged too. And once an axon is destroyed, it doesn’t grow back. That’s the turning point. That’s when the temporary symptoms become permanent disabilities.

Why Some People Get Worse Over Time

About 85% of people are first diagnosed with relapsing-remitting MS (RRMS). They have clear flare-ups, then recover. But over time, for roughly 40% of them, the disease shifts. The flare-ups become less obvious. The MRI scans show fewer new lesions. Yet, they keep getting worse. This is called secondary progressive MS (SPMS). What’s driving it isn’t the same as the early stage.

In the beginning, immune cells from outside the brain flood in and cause damage. Later, the damage comes from inside. Immune cells that live in the brain - especially B cells - form clusters near the brain’s surface, like little war zones. These clusters release chemicals that slowly poison nerve cells. At the same time, the axons that lost their myelin become energy-starved. They can’t carry signals properly. Sodium channels on the axons break down. Mitochondria, the power units of cells, start failing. The brain tries to compensate - other areas light up on scans to take over lost functions - but there’s only so much it can do.

By the time someone reaches SPMS, the real problem isn’t inflammation anymore. It’s degeneration. And that’s why the drugs that worked so well in the early years - the ones that calm the immune system - start to lose their power.

What Disease-Modifying Therapies Actually Do

There are 21 FDA-approved drugs for MS today. All of them are called disease-modifying therapies (DMTs). But they don’t fix the brain. They don’t rebuild myelin. They don’t bring back dead nerves. What they do is stop the immune system from attacking.

Some, like interferons and glatiramer acetate, work like a shield - they mess with immune signals so fewer cells reach the brain. Others, like ocrelizumab and rituximab, wipe out B cells entirely. Natalizumab blocks immune cells from crossing into the brain. These drugs cut relapse rates by 30% to 50%. They reduce new lesions on MRI. They delay the time until someone needs a cane.

But here’s the hard truth: none of these drugs stop the slow, quiet death of axons in progressive MS. That’s why someone on a strong DMT can still lose the ability to walk. That’s why brain shrinkage - especially in the gray matter - keeps happening even when no new lesions appear.

A damaged neuron with failing mitochondria and shadowy immune clusters draining its energy in a dark neural space.

Why Current Treatments Fall Short

Think of MS like a house fire. Early on, the firefighters (DMTs) rush in and put out the flames. That saves the structure. But if the wiring inside the walls has been burning for years, no amount of water will fix the short circuits. That’s what’s happening in progressive MS.

Current DMTs are brilliant at stopping the inflammation. But they don’t protect the nerves. They don’t help mitochondria work better. They don’t replace lost sodium channels. And they don’t reverse the damage done by microglia - the brain’s own immune cells - that turn toxic over time.

This is why disability keeps climbing in SPMS and PPMS, even with the best treatment. MRI scans show fewer new spots, but the person still gets worse. Blood tests look normal. Yet, walking gets harder. Memory fades. Balance disappears. The disconnect between what scans show and how a person feels is one of the biggest frustrations in MS care today.

What’s Coming Next: The New Frontier of MS Treatment

Researchers aren’t giving up. They’re shifting focus. Instead of just fighting inflammation, they’re trying to protect nerves and help them recover.

One promising area is sodium channel blockers. When axons lose myelin, they flood with sodium. That overloads them and kills them. Drugs like phenytoin and lamotrigine - already used for seizures - are being tested to block this flood. Early results show they might slow disability progression.

Another target is mitochondria. Since damaged axons run out of energy, drugs that boost mitochondrial function - like biotin and idebenone - are in clinical trials. One study found high-dose biotin improved walking speed in some SPMS patients.

Then there’s remyelination. Scientists are testing drugs that wake up the brain’s own stem cells to make new myelin. Opicinumab and clemastine are two examples. In lab tests, they’ve rebuilt myelin around nerves. The big question: will that translate to real-world function?

There are 17 active clinical trials targeting progressive MS right now. Most focus on neuroprotection, not inflammation. That’s a major shift. If even one of these works, it could change everything.

Scientists releasing futuristic drugs that repair myelin and restore nerve energy in a glowing brain model.

What You Can Do Today

While we wait for new drugs, there are things that help. Exercise isn’t just good for your mood - it boosts brain-derived neurotrophic factor (BDNF), a protein that supports nerve survival. A 2023 study showed people with MS who did 30 minutes of aerobic exercise three times a week had less brain shrinkage over two years.

Vitamin D matters. Low levels are linked to more relapses and faster progression. Most neurologists recommend 2,000-5,000 IU daily, especially if you live in a northern climate.

Quit smoking. Smoking doubles the risk of turning from RRMS to SPMS. It also speeds up brain atrophy.

And don’t ignore mental health. Depression and anxiety are common in MS - not just because of the diagnosis, but because of brain changes. Treating them isn’t optional. It’s part of protecting your brain.

The Bottom Line

Multiple sclerosis starts with inflammation. But it ends with degeneration. The drugs we have now are powerful - they’ve turned MS from a life-altering disease into a manageable one for many. But they’re not the full solution.

The real battle now is against the silent, slow destruction of nerve fibers. That’s where the next generation of treatments is aimed. Until then, the best thing you can do is stick with your DMT, stay active, take care of your body, and keep pushing for research. Progress isn’t just about stopping relapses anymore. It’s about keeping your brain alive - and your body moving - for as long as possible.